PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_03806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 709aa    MW: 78609.1 Da    PI: 5.1159
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_03806genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06120140526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C  ++++G C  Gd+C+F+Hg
  PEQU_03806 120 PCY-YFQNGGCLKGDKCPFMHG 140
                 677.5555*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8032149IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-112175No hitNo description
SMARTSM003560.00182148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5965177IPR000571Zinc finger, CCCH-type
SMARTSM003560.675376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943115142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6116140IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5116141IPR000571Zinc finger, CCCH-type
PfamPF146080.015120140No hitNo description
Gene3DG3DSA:4.10.1000.102.4E-4120141IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MESGGGRSDP RSLTREEEAV KRNTDCVYFL ASPLTCKKGS ECEYRHSEGA RVNPRDCKFW  60
FSGSCLNPKC LFRHPPLDGP VGNSAASSGP IMMTASQVTE STKLPTMNSS AYNSSRNNVP  120
CYYFQNGGCL KGDKCPFMHG TQPASNSIAK QTSKVFAPVT TQLDTTKKDA RKPEEFRNQQ  180
NSSTAALRIP KESIVQPVKV NLVHKSSSFA QSRNVHVQSD SIEPEAGEIL GDFSEFGYTK  240
LERPLNQQLQ SSRYKNGKGA EEGFTEFSPG FDVLVNNVVK HDRDGFRSKA SQGGRTMNLV  300
DGFDRDQHSG AGDFRRYGKV QNGVDGDQHR TFSVSERILD RPILPVRGST HRLRSPDRVD  360
ETDLRYRLTK QRRLNGSLSA TDSDSESKLD GRHEQKRQDR HTHNPYRDQR QPLPESTISN  420
RLRGRITVPR PLSQEFSSDL QGGGSRGRQR CNLSPVRTLS LQRRLGERLS RKPIEDSSGN  480
GRNTSNQQKS RDGVDTLDFA GPRSLAELKG VKTDESSPAH STKVLHSAGL RDSVVSVPFD  540
GPKPLSTLLK SSREARPEDD AISAVSNDSK AIGEFEAAPV PELQAHHALE TSLEDAKGFI  600
TNPEEPEVGT IVEEEGEIGG EVHFPAAVEQ ITYKLQAEEH EAETGDAVED EELDYTDQRD  660
GEYDYDDTVD GGDYNAEDDE NIDPMNIDDE EEEDEDEDDF AKKIGLIFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123